Files in alorchhota/spice
SPICE: Spanning tree based inference of co-expression networks
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/RcppExports.R
R/check_compatibility_of_net_and_known.R
R/coexpression_known_interactions_auc.R
R/coexpression_known_interactions_cor.R
R/coexpression_known_interactions_hub_auc.R
R/coexpression_known_interactions_precision_at_top.R
R/coexpression_pathway_enrichment.R
R/coexpression_shared_pathway_auc.R
R/get_string_ppi_matrix.R
R/mean_rank_for_known_geodesic_distance.R
R/rminmax_df.R
R/spice.R
README.md
man/coexpression_known_interactions_auc.Rd
man/coexpression_known_interactions_cor.Rd
man/coexpression_known_interactions_hub_auc.Rd
man/coexpression_known_interactions_precision_at_top.Rd
man/coexpression_pathway_enrichment.Rd
man/coexpression_shared_pathway_auc.Rd
man/get_string_ppi_matrix.Rd
man/mean_rank_for_known_geodesic_distance.Rd
man/rminmax_df.Rd
man/spice.Rd
src/RcppExports.cpp
src/kruskal_mst.cpp
src/matrix.cpp
src/spice_helpers.cpp
tests/testthat.R
tests/testthat/test_mean_rank_for_known_geodesic_distance.R
tests/testthat/test_shared_object.R
