loessfit2: Empirical GC bias model, NA12144

In alyssafrazee/polyester: Simulate RNA-seq reads

Description

Loess model for log counts measuring transcript expression as a function of the transcript's GC content. The model was created using sample NA12144 in the Ballgown obtained at http://files.figshare.com/1625419/fpkm.rda

Format

Object of class loess

Source

Constructed using the code available at https://github.com/alyssafrazee/polyester/blob/master/gc_bias.R

References

GEUVADIS data set: 't Hoen PA, et al (2013): Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories. Nature Biotechnology 31(11): 1015-1022.

Lappalainen, et al (2013): Transcriptome and genome sequencing uncovers functional variation in humans. Nature 501: 506-511.

alyssafrazee/polyester documentation built on Sept. 17, 2021, 8:54 a.m.