Files in alyssafrazee/polyester
Simulate RNA-seq reads
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
ErrorModels.md
NAMESPACE
NEWS
R/NB.R
R/add_error.R
R/add_gc_bias.R
R/add_platform_error.R
R/cdnaf.R
R/check_extras.R
R/count_transcripts.R
R/create_read_numbers.R
R/empirical_density.R
R/fpkm_to_counts.R
R/generate_fragments.R
R/getAttributeField.R
R/get_params.R
R/get_reads.R
R/gtf_dataframe.R
R/loessfit1.R
R/loessfit2.R
R/loessfit3.R
R/loessfit4.R
R/loessfit5.R
R/loessfit6.R
R/loessfit7.R
R/model1.R
R/model2.R
R/model3.R
R/model4.R
R/model5.R
R/model6.R
R/model7.R
R/polyester-package.R
R/reverse_complement.R
R/rnaf.R
R/seq_gtf.R
R/sgseq.R
R/simulate_experiment.R
R/simulate_experiment_countmat.R
R/simulate_experiment_empirical.R
R/write_reads.R
README.md
build_error_models.py
cdna_pos_bias.csv
data/cdnaf.rda
data/empirical_density.rda
data/gtf_dataframe.rda
data/ill100v4_mate1.rda
data/ill100v4_mate2.rda
data/ill100v4_single.rda
data/ill100v5_mate1.rda
data/ill100v5_mate2.rda
data/ill100v5_single.rda
data/loessfit1.rda
data/loessfit2.rda
data/loessfit3.rda
data/loessfit4.rda
data/loessfit5.rda
data/loessfit6.rda
data/loessfit7.rda
data/rnaf.rda
insert_sizes.sh
inst/extdata/bg.gtf.gz
inst/extdata/chr22.fa
inst/extdata/toy.fa
make_error_models.R
make_fraglen_model.R
make_gc_bias.R
make_positional_bias_model.R
man/NB.Rd
man/add_error.Rd
man/add_gc_bias.Rd
man/add_platform_error.Rd
man/cdnaf.Rd
man/count_transcripts.Rd
man/create_read_numbers.Rd
man/empirical_density.Rd
man/fpkm_to_counts.Rd
man/generate_fragments.Rd
man/getAttributeField.Rd
man/get_params.Rd
man/get_reads.Rd
man/gtf_dataframe.Rd
man/loessfit1.Rd
man/loessfit2.Rd
man/loessfit3.Rd
man/loessfit4.Rd
man/loessfit5.Rd
man/loessfit6.Rd
man/loessfit7.Rd
man/model1.Rd
man/model2.Rd
man/model3.Rd
man/model4.Rd
man/model5.Rd
man/model6.Rd
man/model7.Rd
man/polyester.Rd
man/reverse_complement.Rd
man/rnaf.Rd
man/seq_gtf.Rd
man/simulate_experiment.Rd
man/simulate_experiment_countmat.Rd
man/simulate_experiment_empirical.Rd
man/write_reads.Rd
rnaf_pos_bias.csv
vignettes/polyester.Rmd
