Files in alyssafrazee/polyester
Simulate RNA-seq reads

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
ErrorModels.md
NAMESPACE
NEWS
R/NB.R R/add_error.R R/add_gc_bias.R R/add_platform_error.R R/cdnaf.R R/check_extras.R R/count_transcripts.R R/create_read_numbers.R R/empirical_density.R R/fpkm_to_counts.R R/generate_fragments.R R/getAttributeField.R R/get_params.R R/get_reads.R R/gtf_dataframe.R R/loessfit1.R R/loessfit2.R R/loessfit3.R R/loessfit4.R R/loessfit5.R R/loessfit6.R R/loessfit7.R R/model1.R R/model2.R R/model3.R R/model4.R R/model5.R R/model6.R R/model7.R R/polyester-package.R R/reverse_complement.R R/rnaf.R R/seq_gtf.R R/sgseq.R R/simulate_experiment.R R/simulate_experiment_countmat.R R/simulate_experiment_empirical.R R/write_reads.R README.md
build_error_models.py
cdna_pos_bias.csv
data/cdnaf.rda
data/empirical_density.rda
data/gtf_dataframe.rda
data/ill100v4_mate1.rda
data/ill100v4_mate2.rda
data/ill100v4_single.rda
data/ill100v5_mate1.rda
data/ill100v5_mate2.rda
data/ill100v5_single.rda
data/loessfit1.rda
data/loessfit2.rda
data/loessfit3.rda
data/loessfit4.rda
data/loessfit5.rda
data/loessfit6.rda
data/loessfit7.rda
data/rnaf.rda
insert_sizes.sh
inst/extdata/bg.gtf.gz
inst/extdata/chr22.fa
inst/extdata/toy.fa
make_error_models.R make_fraglen_model.R make_gc_bias.R make_positional_bias_model.R man/NB.Rd man/add_error.Rd man/add_gc_bias.Rd man/add_platform_error.Rd man/cdnaf.Rd man/count_transcripts.Rd man/create_read_numbers.Rd man/empirical_density.Rd man/fpkm_to_counts.Rd man/generate_fragments.Rd man/getAttributeField.Rd man/get_params.Rd man/get_reads.Rd man/gtf_dataframe.Rd man/loessfit1.Rd man/loessfit2.Rd man/loessfit3.Rd man/loessfit4.Rd man/loessfit5.Rd man/loessfit6.Rd man/loessfit7.Rd man/model1.Rd man/model2.Rd man/model3.Rd man/model4.Rd man/model5.Rd man/model6.Rd man/model7.Rd man/polyester.Rd man/reverse_complement.Rd man/rnaf.Rd man/seq_gtf.Rd man/simulate_experiment.Rd man/simulate_experiment_countmat.Rd man/simulate_experiment_empirical.Rd man/write_reads.Rd
rnaf_pos_bias.csv
vignettes/polyester.Rmd
alyssafrazee/polyester documentation built on Aug. 5, 2017, 4:11 p.m.