Files in amalthomas111/SBF
R package to compute Shared Basis Factorization (SBF)

.gitignore

DESCRIPTION

NAMESPACE

R/SBF.R R/analysis.R R/data.R R/helper.R R/matrix_factorization.R R/optimize.R README.Rmd README.md

SBF.Rproj

data/TissueExprSpecies.rda

doc/GeneExpressionAnalysis.R doc/GeneExpressionAnalysis.Rmd doc/GeneExpressionAnalysis.pdf doc/GeneExpressionAnalysisComparisons.R doc/GeneExpressionAnalysisComparisons.Rmd doc/GeneExpressionAnalysisComparisons.pdf doc/HumanMouseBloodAnalysis.R doc/HumanMouseBloodAnalysis.Rmd doc/HumanMouseBloodAnalysis.pdf doc/SBFMathExamples.R doc/SBFMathExamples.Rmd doc/SBFMathExamples.pdf

inst/CITATION

man/GSVD.Rd man/HOGSVD.Rd man/SBF.Rd man/TissueExprSpecies.Rd man/calcAvgCounts.Rd man/calcDecompError.Rd man/calcNearestOrthoMatrix.Rd man/calcPercentInfo.Rd man/computeUDelta.Rd man/countToTpm.Rd man/createRandomMatrices.Rd man/getScientificName.Rd man/getSpeciesShortName.Rd man/invertDelta.Rd man/normalizeTPM.Rd man/optimizeFactorization.Rd man/projectCounts.Rd man/updateDelta.Rd man/updateU.Rd man/updateV.Rd

vignettes/.gitignore

vignettes/GeneExpressionAnalysis.Rmd vignettes/GeneExpressionAnalysisComparisons.Rmd vignettes/HumanMouseBloodAnalysis.Rmd vignettes/SBFMathExamples.Rmd

vignettes/references.bib

amalthomas111/SBF documentation built on Sept. 2, 2022, 11:27 a.m.

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