Files in amcdavid/GeneseeBulk
Pipeline, analysis functions and markdown templates for bulk RNAseq
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
NAMESPACE
R/AllClasses.R
R/NebulaSE-methods.R
R/generics.R
R/globals.R
R/negbin-mixed-de.R
R/rnaseq.R
R/tidy-deseqtransfrom.R
README.Rmd
README.md
inst/RNA_R/00driver.R
inst/RNA_git/README.md
inst/RNA_git/_gitattributes
inst/RNA_git/_gitignore
inst/RNA_git/example_design.csv
inst/RNA_git/git-lfs-howto.md
inst/RNA_markdown/01_load.Rmd
inst/RNA_markdown/02_qc_dea.Rmd
inst/RNA_projectexample/extradata/fe_design.csv
inst/RNA_projectexample/extradata/fe_design_terms.csv
inst/RNA_projectexample/rawdata/deSeq2_subcounts.txt
inst/RNA_projectexample/sample_sheet.csv
man/DESeq2_tidiers.Rd
man/NebulaSE-class.Rd
man/gresults-g_nebula.Rd
man/gresults.Rd
man/has_re.Rd
man/run_deseq_design.Rd
man/run_glmm_nb_design.Rd
man/run_nebula.Rd
man/se_pca_plot.Rd
tests/testthat.R
tests/testthat/known_cache/.gitignore
tests/testthat/known_cache/keep
tests/testthat/test-01-load.R
tests/testthat/test-02-dea.R
tests/testthat/test-negbin-mixed.R
