R/globals.R

In amcdavid/GeneseeBulk: Pipeline, analysis functions and markdown templates for bulk RNAseq

# Generated by roxyglobals: do not edit by hand

utils::globalVariables(c(
  "idx", # <tidy.NebulaSE>
  "convergence", # <tidy.NebulaSE>
  "term", # <tidy.NebulaSE>
  "quantity", # <tidy.NebulaSE>
  "logFC", # <tidy.NebulaSE>
  "se", # <tidy.NebulaSE>
  "p", # <tidy.NebulaSE>
  "p.value", # <tidy.NebulaSE>
  "idx", # <add_gene_name>
  ".data", # <gresults.NebulaSE>
  "estimate", # <gresults.NebulaSE>
  "p.value", # <gresults.NebulaSE>
  "p.adjusted", # <gresults.NebulaSE>
  "estimate", # <do_nebula_contrasts>
  "p.value", # <do_nebula_contrasts>
  "gene", # <run_nebula>
  "gene_id", # <run_nebula>
  "PC1", # <se_pca_plot>
  "PC2", # <se_pca_plot>
  "gene", # <plotLoadings>
  "key", # <plotLoadings>
  "value", # <plotLoadings>
  "genef", # <plotLoadings>
  "-sign(value)", # <plotLoadings>
  "ggord", # <se_sparsepca_plot>
  "1", # <se_sparsepca_plot>
  "2", # <se_sparsepca_plot>
  "log2FoldChange", # <modified_volc>
  "pvalue", # <modified_volc>
  "p_rank", # <modified_volc>
  "SYMBOL", # <modified_volc>
  "padj", # <modified_volc>
  "label", # <modified_volc>
  "log2Count", # <tidy.DESeqTransform>
  "gene", # <tidy.DESeqTransform>
  NULL
))