Man pages for amcdavid/HurdleNormal
'Estimation and sampling for multi-dimensional Hurdle models on a Normal density with applications to single-cell co-expression'
| Block | Define parameter groups |
| cgpaths | Get a solution path for the CG model |
| collectStability | Process stability selected networks |
| conditionalCenter | Center data so that it has conditional column mean zero |
| eval_grid_hurdle_measure | Evaluate a Riemann sum on a grid of points that includes zero |
| fitHurdle | Fit the hurdle model coordinate-by-coordinate on a sample |
| getConditionalMLE | Loop over indices and solve condiiton MLE |
| getGibbs | Update the current gibbs sample for a 'HurdleStructure' |
| getSafeApprox | Return a function interpolating over a grid |
| ggally_hurdle | Wrapper so ggally can use 'geom_hurdle' |
| hn_plot | Plot an igraph object |
| HurdleNormal-package | A Hurdle model is a modification of a distribution at zero.... |
| HurdleStructure | Structure to hold a model, samples and estimates |
| hushWarning | Selectively muffle warnings based on output |
| interpolateEdges | Interpolate set of adjacency matrix across a set of edges |
| interpolateSummarizeCoefs | Interpolate a solution path using approxFun and reduce the... |
| makeModel | Generate a design matrix corresponding to the 2-1-0 hurdle |
| neighborhoodToArray | neighborhoodToArray |
| plotSolPath | Plot a solution path |
| promoteWarning | Selectively convert a warnings to an error |
| rCondHurdle210 | Sample from the full conditional distribution |
| rGibbsHurdle | Sample from a multivariate hurdle model |
| setupStabilityIndex | Set up the subsamples that will be taken for stability... |
| shalek2014_list | Single Cell RNAseq Expression Data from Shalek (2014) |
| sparseCbind | Recursively flatten and bind together sparse matrices |
| stability | Refit models for stability selection |
| unpackTheta | Convert from old style to new style parameter vector or vice... |
