'Estimation and sampling for multi-dimensional Hurdle models on a Normal density with applications to single-cell co-expression'

Block | Define parameter groups |

cgpaths | Get a solution path for the CG model |

collectStability | Process stability selected networks |

conditionalCenter | Center data so that it has conditional column mean zero |

eval_grid_hurdle_measure | Evaluate a Riemann sum on a grid of points that includes zero |

fitHurdle | Fit the hurdle model coordinate-by-coordinate on a sample |

getConditionalMLE | Loop over indices and solve condiiton MLE |

getGibbs | Update the current gibbs sample for a 'HurdleStructure' |

getSafeApprox | Return a function interpolating over a grid |

ggally_hurdle | Wrapper so ggally can use 'geom_hurdle' |

hn_plot | Plot an igraph object |

HurdleNormal-package | A Hurdle model is a modification of a distribution at zero.... |

HurdleStructure | Structure to hold a model, samples and estimates |

hushWarning | Selectively muffle warnings based on output |

interpolateEdges | Interpolate set of adjacency matrix across a set of edges |

interpolateSummarizeCoefs | Interpolate a solution path using approxFun and reduce the... |

makeModel | Generate a design matrix corresponding to the 2-1-0 hurdle |

neighborhoodToArray | neighborhoodToArray |

plotSolPath | Plot a solution path |

promoteWarning | Selectively convert a warnings to an error |

rCondHurdle210 | Sample from the full conditional distribution |

rGibbsHurdle | Sample from a multivariate hurdle model |

setupStabilityIndex | Set up the subsamples that will be taken for stability... |

shalek2014_list | Single Cell RNAseq Expression Data from Shalek (2014) |

sparseCbind | Recursively flatten and bind together sparse matrices |

stability | Refit models for stability selection |

unpackTheta | Convert from old style to new style parameter vector or vice... |

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