Files in amcdavid/HurdleNormal
'Estimation and sampling for multi-dimensional Hurdle models on a Normal density with applications to single-cell co-expression'
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/Geom3.R
R/GroupLassoHurdle.R
R/HurdleDistributions.R
R/HurdleLikelihoodClass.R
R/HurdleNormal-package.R
R/HurdleStructure.R
R/MLE.R
R/NeighborhoodEstimation.R
R/PlotNetworks.R
R/ProcessNeighborhoods.R
R/RcppExports.R
R/Util.R
R/zzz.R
README.md
data-raw/preprocessShalek.R
data-raw/shalek.RData
data/shalek2014.RData
doc/singlecell-networks.html
inst/aoas_simulations/Ecoli_goldstandard_signed.tsv
inst/aoas_simulations/README.md
inst/aoas_simulations/common.R
inst/aoas_simulations/ecoli_network.rds
inst/aoas_simulations/fitAlex.R
inst/aoas_simulations/fitLausanne_only_pp.R
inst/aoas_simulations/godb.RData
inst/aoas_simulations/processShalekMAITNetworks.Rmd
inst/aoas_simulations/processShalek_go_terms_table2.csv
inst/aoas_simulations/processSimulations.Rmd
inst/aoas_simulations/simulation_library.R
inst/aoas_simulations/simulations.R
man/Block.Rd
man/HurdleNormal-package.Rd
man/HurdleStructure.Rd
man/cgpaths.Rd
man/collectStability.Rd
man/conditionalCenter.Rd
man/eval_grid_hurdle_measure.Rd
man/fitHurdle.Rd
man/getConditionalMLE.Rd
man/getGibbs.Rd
man/getSafeApprox.Rd
man/ggally_hurdle.Rd
man/hn_plot.Rd
man/hushWarning.Rd
man/interpolateEdges.Rd
man/interpolateSummarizeCoefs.Rd
man/makeModel.Rd
man/neighborhoodToArray.Rd
man/plotSolPath.Rd
man/promoteWarning.Rd
man/rCondHurdle210.Rd
man/rGibbsHurdle.Rd
man/setupStabilityIndex.Rd
man/shalek2014_list.Rd
man/sparseCbind.Rd
man/stability.Rd
man/unpackTheta.Rd
src/.gitignore
src/RcppExports.cpp
src/assert.h
src/grplasso.h
src/hurdle.h
src/hurdle_distributions.cpp
src/hurdle_likelihood.cpp
src/hurdle_likelihood.h
tests/testthat.R
tests/testthat/common.R
tests/testthat/test-GroupLassoHurdle.R
tests/testthat/test-HurdleDistributions.R
tests/testthat/test-MLE.R
tests/testthat/test-NeighborhoodEstimation.R
tests/testthat/test-cppMLE.R
vignettes/bibliography.bib
vignettes/graph_example.png
vignettes/singlecell-networks.Rmd
