Man pages for amchakra/toscatools
Tosca proximity ligation pipeline toolkit
| add_read_lengths | Add read lengths |
| analyse_structure | Analyses hybrid structure |
| annotate_hybrids | Annotate hybrids |
| bin_matrix | Bin contact map matrix |
| calculate_blast8_metrics | Calculate blast8 metrics |
| cluster_hybrids | Cluster overlapping hybrids |
| collapse_clusters | Collapse clusters |
| convert_coordinates | Convert coordinates |
| convert_linkerbam_to_hybrids | Title |
| convert_to_datatable | Converts GRangesList to hybrid data.table |
| convert_to_granges | Converts hybrids data.table to GRanges |
| export_genomic_bed | Export BED |
| filter_valid_hybrids | Filter valid hybrids |
| find_hybrid_overlaps | Find overlapping pairs of hybrids |
| find_valid_hybrid_overlaps | Find valid overlaps between hybrids |
| get_contact_map | Get contact map |
| get_mfe | Get binding energy |
| get_ncbi_sequence | Get sequence from NCBI |
| get_sequence | Get sequence |
| get_shuffled_mfe | Get shuffles binding energies |
| get_valid_hybrids | Get valid hybrids |
| hello | Hello, World! |
| load_blast8 | Load blast8 file |
| reorient_hybrids | Reorients hybrids |
| shuffle_sequence | Shuffle sequence |
