find_hybrid_overlaps: Find overlapping pairs of hybrids
In amchakra/toscatools: Tosca proximity ligation pipeline toolkit
View source: R/cluster_hybrids.R
find_hybrid_overlaps R Documentation
Find overlapping pairs of hybrids
Description
Uses bedtools pairtopair to get all overlaps and then calculates percentage overlaps based on overall span of overlapping left and right arms.
Called by cluster_hybrids
Usage
find_hybrid_overlaps(hybrids.dt, verbose = FALSE)
Arguments
hybrids.dt
Hybrids data.table
verbose
Print bedtools command
Value
bedpe.dt with left arm, right arm and mean percentage overlap calculated
amchakra/toscatools documentation built on Nov. 26, 2022, 12:35 p.m.
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View source: R/cluster_hybrids.R
| find_hybrid_overlaps | R Documentation |
Find overlapping pairs of hybrids
Description
Uses bedtools pairtopair to get all overlaps and then calculates percentage overlaps based on overall span of overlapping left and right arms.
Called by cluster_hybrids
Usage
find_hybrid_overlaps(hybrids.dt, verbose = FALSE)
Arguments
hybrids.dt |
Hybrids data.table |
verbose |
Print |
Value
bedpe.dt with left arm, right arm and mean percentage overlap calculated
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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