ggUpsetPeaks: ggUpsetPeaks

In amitjavilaventura/seqViewR: Visualization of Omics And Sequencing Data In R

ggUpsetPeaks

Description

Function that calls 'getVennCounts' and draws an ggplot2-based upset plot.

Usage

ggUpsetPeaks(peaks, conds = names(peaks), conds_order = cond, order_by_freq = T, num_size = 4, title = NULL, subtitle = NULL, caption = NULL)

Arguments

peaks	List of dataframes with the genomic coordinates of the regions to overlap. Dataframes must contain the columns seqnames, start, end.
conds	Character with the same length as the 'peaks' list. The names that are given to the diferente objects in the 'peaks' list. Default: 'names(peaks)'
conds_order	Character of the same length as 'conds'. Same values as in 'conds' but with the desired order of priority. Default: 'conds'.
order_by_freq	Logical of length 1. If TRUE (the default), the intersections are arranged by descending order of size. Default: TRUE.
num_size	Numeric of length 1. Size of the labels indicating the size of each intersection. Default: 4.
title	Character of length 1. Title of the plot. Default: NULL.
subtitle	Character of length 1. Subtitle of the plot. Default: NULL.
caption	Character of length 1. Caption written at the bottom of the plot. Default: NULL.

Author(s)

amitjavilaventura

See Also

plyranges

amitjavilaventura/seqViewR documentation built on Nov. 21, 2023, 10:12 a.m.