ggVennBed: ggVennBed

In amitjavilaventura/seqViewR: Visualization of Omics And Sequencing Data In R

ggVennBed

Description

Does the intersection of two BED files (A and B) and draws the intersection with the unique peaks of A and B and the intersections of A with B and B with A.

Usage

ggVennBed(
  a,
  b,
  setnames = c("A", "B"),
  stranded = T,
  color = c("blue", "gold3"),
  alpha = 0.5,
  namesize = 7,
  labsize = 5,
  title = NULL,
  subtitle = NULL,
  title_size = 12,
  subtitle_size = 11,
  title_face = "plain",
  subtitle_face = "italic"
)

Arguments

a	Data frame or character of length 1. Path to a BED file or data frame with BED format. If data frame, it will be written to a temporary file.
b	Data frame or character of length 1. Path to a BED file or data frame with BED format. If data frame, it will be written to a temporary file.
setnames	Character of length 2. Names of the data sets of 'a' and 'b'. Default: c("A", "B").
stranded	Logical of length 1. If TRUE, the intersections are done regarding the strand. Default = TRUE.
color	Character of length 2. Color of the Venn circles and the labels indicating the number of regions. Default: c("blue", "gold3").
alpha	Numeric of length 1. Transparency of the circles. Default: 0.5.
namesize	Numeric of length 1. Size of the names of each set. Default: 7.
labsize	Numeric of length 1. Size of the labels indicating the number of unique and overlapping regions.

Author(s)

amitjavilaventura

See Also

bedtoolsr::bt.intersect

ggvenn::ggvenn

amitjavilaventura/seqViewR documentation built on Nov. 21, 2023, 10:12 a.m.