computeAdvancedStatistics: Compute more advanced statistics

In ammar257ammar/ArrayAnalysis-Bioconductor: ArrayAnalysis

Compute more advanced statistics

Description

Compute more advanced statistics

Usage

computeAdvancedStatistics(
  normDataTable,
  descriptionFile,
  covariates_string,
  interaction_string,
  paired_string,
  plotVolcanoPlot,
  plotVennPlot,
  matfileName = NULL,
  keepAnnotation = FALSE,
  defaultContr = TRUE
)

Arguments

normDataTable	normalized data object (Status=required)
descriptionFile	(Status: required) The data.frame containing the description file information (column 1: file names; column 2: names to be used in the plots; column 3: experimental groups the samples belong to)(datatype: data.frame)
covariates_string	(Status=required)
interaction_string	(Status=required)
paired_string	(Status=required)
plotVolcanoPlot	(Status=required)
plotVennPlot	(Status=required)
matfileName	(datatype=character, Default=NULL)
keepAnnotation	(datatype=logical, Default=FALSE)
defaultContr	(datatype=logical, Default=TRUE)

Value

the contrast matrix file

Examples

#example here

ammar257ammar/ArrayAnalysis-Bioconductor documentation built on Jan. 29, 2024, 7:21 a.m.