t1_stats_pipeline: This is a pipeline to run GLM for group comparison based on...

In anbai106/NeuroStatisticR:

Description

This is a pipeline to run GLM for group comparison based on the ROI measures for T1-weighted MRI

Usage

t1_stats_pipeline(input_tsv, output_dir, roi_start, roi_end, sep = "\t",
  groupPalette = c("blue", "darkorange", "red"),
  groupPalette_CN_PS = c("blue", "darkorange"))

Arguments

input_tsv	the tsv file containing all the ROI measurement. The file should strictly contian these columns: "participant_id session_id group age_bl prevdemals_family_code sex", then following each column for each ROI
output_dir	the folder containing all the outputs
roi_start	the first ROI name
roi_end	the last ROI name
sep	the separator for the tsv file, by default is '\t'

Value

the table containing the results and also the png image for the meta-analysis of the data.

Examples

t1_stats_pipeline(input_tsv, output_dir, roi_start, roi_end)

anbai106/NeuroStatisticR documentation built on May 27, 2020, 2:20 a.m.