plot_time_to_report: Plot time from onset of symptoms to case being reported.

In andrew-edwards/rightTruncation: Likelihood Calculations for Right-truncated Data as Used for Delay Distributions During COVID-19

Description

Bar plots for each day, plus points for each case. Adapted from Mike Irvine's code, could replace with Sean's later code that was used in the manuscript. Need bit more description.

Usage

plot_time_to_report(
  data,
  start_date_report = "2020-03-10",
  start_date_onset = "2020-03-05",
  show_weekends = FALSE,
  x_axis = "reported",
  xLim = c(lubridate::ymd("2020-02-28"), lubridate::ymd("2020-04-07")),
  yLab = "Time from symptom onset\n to reported case (days)"
)

Arguments

data	tibble with columns XX
start_date_report	First date of reported case to show.
start_date_onset	First date of symptom onset to show
show_weekends	Highlight weekends or not
x_axis	Either reported to show date of case being reported, or onset for date of symptom onset
xLim	Limits of dates for x-axis
yLab	Label for y-axis

Value

desired plot

Author(s)

Andrew Edwards adapted from Mike Irvine's code

andrew-edwards/rightTruncation documentation built on Jan. 18, 2021, 7:43 p.m.