gene.matrix.stats: 'Summary' method for gene.matrix.

In andrew-hipp/morton: Tools for manipulation of phylogenetic, genetic, and other biodiversity data

Summary method for gene.matrix.

Description

Write a text file to the working directory which details the summary statistics a multiple locus sequence dataset following processing by make.gene.matrix.

Usage

gene.matrix.stats(mat, outfile = paste("geneStats.",
                                       paste(sample(letters, 5), collapse = ""), 
                                       ".txt", 
                                       sep = ""))

Arguments

mat	A matrix, the output of make.gene.matrix, connecting gene sequences to specimen voucher.
outfile	An optional string, the name of the output text file. By default, it is geneStats followed by five random letters.

Value

Returns the string 'done!'. Called for side-effect of writing summary file.

Author(s)

Kasey Pham and Andrew Hipp

See Also

make.gene.matrix

andrew-hipp/morton documentation built on April 7, 2024, 12:15 p.m.