match.nodes: Match and Plot Nodes of Multiple Trees

In andrew-hipp/morton: Tools for manipulation of phylogenetic, genetic, and other biodiversity data

Match and Plot Nodes of Multiple Trees

Description

Match the nodes and bootstraps of multiple trees to one reference tree and plot bootstrap values.

Usage

match.nodes(guideTree, otherTrees, matchBoots = T, plotBoots = T, ...)

Arguments

guideTree	The reference tree to which other tree's nodes and bootstraps are matched.
otherTrees	A single tree (class phylo) or a list of trees to be matched to the reference tree.
matchBoots	An optional logical value – whether the function should also match bootstraps in addition to nodes.
plotBoots	An optional logical value– whether the function should plot bootstrap values.
...	Other arguments that can be passed on to the function matplot.

Details

matchBoots and plotBoots both default to TRUE.

Value

mat.full	A matrix of all matched nodes.
mat.index	all rows of mat.full that contain values.

Author(s)

Andrew Hipp and Kasey Pham

See Also

matchNodes, matplot

andrew-hipp/morton documentation built on April 7, 2024, 12:15 p.m.