Man pages for andrewGhazi/basehitmodel
Runs the basehit ZINB model
| filter_melt_join | melt_join either including or excluding a certain pattern |
| filter_multirun | Filter multirun data |
| fit_one_protein | Fit the model to one protein |
| get_prot_bc_map | get the protein to barcode mapping |
| get_summary | Summarise fits |
| hit_calling_plot | Make a hit calling plot |
| hit_calling_venn | Venn diagram of hit-calling thresholds |
| melt_join | Convert a table of basehit counts from wide to long and join... |
| model_proteins_separately | Run the basehit model one protein at a time |
| multi_hit_calling_plot | Show hit-calling metrics for multiple interactions |
| pipe | Pipe operator |
| plot_model_inputs | Plot barcode level model inputs |
| p_type_s | Stats function to calculate the probability of a type S error... |
| read_multirun | Read in the csvs from count path. Split into three for Pre,... |
| read_outputs_one | Read the count file for one run |
| read_pre | Read the pre counts |
| write_splits | Write split data |
| write_summary | Write out fit summary files with notes on bead binding |
