hit_calling_venn: Venn diagram of hit-calling thresholds

In andrewGhazi/basehitmodel: Runs the basehit ZINB model

Venn diagram of hit-calling thresholds

Description

This function draws a Venn diagram of the counts of interactions that pass the three hit-calling criteria for the provided thresholds.

Usage

hit_calling_venn(
  score_df,
  score_threshold = 0.5,
  concordance_threshold = 0.75,
  interval_width = 0.95
)

Arguments

score_df	a dataframe of basehit scores from model_proteins_separately()
score_threshold	exclude ixns with scores below this value
concordance_threshold	exclude ixns with concordance values below this threshold
interval_width	exclude ixns where a credible interval of this proportion includes 0

andrewGhazi/basehitmodel documentation built on Oct. 22, 2023, 9:21 p.m.