filter_multirun: Filter multirun data

In andrewGhazi/basehitmodel: Runs the basehit ZINB model

Filter multirun data

Description

Filter multirun data to ixns with at least min_n_nz nonzero output counts or at least a proportion of nonzero counts > min_frac_nz

Usage

filter_multirun(
  count_list,
  cache_dir = NULL,
  out_dir = NULL,
  save_outputs = TRUE,
  check_cache = TRUE,
  min_n_nz = 3,
  min_frac_nz = 0.5,
  drop_multirun_strains = TRUE,
  id_order = c("strain", "repl", "plate"),
  verbose = TRUE
)

andrewGhazi/basehitmodel documentation built on Oct. 22, 2023, 9:21 p.m.