generate_dist_mat: Generate a distance matrix from a matrix of predictors
In andrewGhazi/bayesianMPRA: A Bayesian framework for modelling MPRA data with an informative, annotation based empirical prior

Given an nxd matrix of variant annotations, produce an nxn distance matrix describing the inter-variant distances in annotation space

1	generate_dist_mat(predictors, log_distance = TRUE)

`predictors`	an n x d data frame of predictors
`log_distance`	a logical indicating to use the log1p of the distances (TRUE) or the raw euclidean distances (FALSE)

the predictors need to be ordered by snp_id in the same order as they appear in mpra_data

andrewGhazi/bayesianMPRA documentation built on May 28, 2019, 4:56 p.m.

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