Files in andrewholding/Brundle
Normalisation Tools for Inter-Condition Variability of ChIP-Seq Data
..Rcheck/00check.log
..Rcheck/00install.out
..Rcheck/Brundle-Ex.R
..Rcheck/Brundle-Ex.Rout
..Rcheck/Brundle-Ex.pdf
..Rcheck/Brundle-Ex.timings
..Rcheck/Brundle-manual.log
..Rcheck/Brundle-manual.pdf
..Rcheck/Brundle/DESCRIPTION
..Rcheck/Brundle/INDEX
..Rcheck/Brundle/Meta/Rd.rds
..Rcheck/Brundle/Meta/data.rds
..Rcheck/Brundle/Meta/features.rds
..Rcheck/Brundle/Meta/hsearch.rds
..Rcheck/Brundle/Meta/links.rds
..Rcheck/Brundle/Meta/nsInfo.rds
..Rcheck/Brundle/Meta/package.rds
..Rcheck/Brundle/NAMESPACE
..Rcheck/Brundle/R/Brundle
..Rcheck/Brundle/R/Brundle.rdb
..Rcheck/Brundle/R/Brundle.rdx
..Rcheck/Brundle/data/Rdata.rdb
..Rcheck/Brundle/data/Rdata.rds
..Rcheck/Brundle/data/Rdata.rdx
..Rcheck/Brundle/extdata/samplesheet_SLX14438_hs_CTCF_DBA.csv
..Rcheck/Brundle/extdata/samplesheet_SLX14438_hs_ER_DBA.csv
..Rcheck/Brundle/help/AnIndex
..Rcheck/Brundle/help/Brundle.rdb
..Rcheck/Brundle/help/Brundle.rdx
..Rcheck/Brundle/help/aliases.rds
..Rcheck/Brundle/help/paths.rds
..Rcheck/Brundle/html/00Index.html
..Rcheck/Brundle/html/R.css
..Rcheck/Rdlatex.log
.DS_Store
.Rbuildignore
.gitignore
Brundle.Rproj
DESCRIPTION
NAMESPACE
R/brundle-data.R
R/brundle.R
README.md
data/dbaControl.rda
data/dbaExperiment.rda
data/jg.conditions.rda
data/jg.controlCountsTreated.rda
data/jg.controlCountsUntreated.rda
data/jg.controlPeakset.rda
data/jg.controlPeaksetDeSeq.rda
data/jg.controlResultsDeseq.rda
data/jg.experimentPeakset.rda
data/jg.experimentResultsDeseq.rda
inst/extdata/samplesheet_SLX14438_hs_CTCF_DBA.csv
inst/extdata/samplesheet_SLX14438_hs_ER_DBA.csv
man/Brundle.Rd
man/dbaControl.Rd
man/dbaExperiment.Rd
man/jg.applyNormalisation.Rd
man/jg.conditions.Rd
man/jg.controlCountsTreated.Rd
man/jg.controlCountsUntreated.Rd
man/jg.controlPeaks.Rd
man/jg.controlPeakset.Rd
man/jg.controlPeaksetDeSeq.Rd
man/jg.controlResultsDeseq.Rd
man/jg.convertPeakset.Rd
man/jg.correctDBASizeFactors.Rd
man/jg.countAlignedMReads.Rd
man/jg.dbaGetPeakset.Rd
man/jg.experimentPeakset.Rd
man/jg.experimentResultsDeseq.Rd
man/jg.getControlCounts.Rd
man/jg.getCorrectionFactor.Rd
man/jg.getDba.Rd
man/jg.getNormalizationCoefficient.Rd
man/jg.getSampleIds.Rd
man/jg.plotDeSeq.Rd
man/jg.plotDeSeqCombined.Rd
man/jg.plotMA.Rd
man/jg.plotNormalization.Rd
man/jg.runDeSeq.Rd
