Man pages for andrewholding/Brundle
Normalisation Tools for Inter-Condition Variability of ChIP-Seq Data

BrundleBrundle
dbaControlExample DiffBind Object of Control Peaks
dbaExperimentExample DiffBind Object of Experimental Peaks
jg.applyNormalisationjg.applyNormalisation
jg.conditionsExample Sample Condition Matrix
jg.controlCountsTreatedExample ChIP-seq Count Matrix
jg.controlCountsUntreatedExample ChIP-seq Count Matrix
jg.controlPeaksExample ChIP-seq Control Peakset
jg.controlPeaksetExample ChIP-seq Control Peakset
jg.controlPeaksetDeSeqExample ChIP-seq Control Peakset
jg.controlResultsDeseqExample ChIP-seq DeSEQ2 Control results
jg.convertPeaksetjg.convertPeakset
jg.correctDBASizeFactorsjg.correctDBASizeFactors
jg.countAlignedMReadsjg.countAlignedMReads
jg.dbaGetPeaksetdbaGetPeakset
jg.experimentPeaksetExample ChIP-seq Experiment Peakset
jg.experimentResultsDeseqExample ChIP-seq DeSEQ2 results
jg.getControlCountsjg.getControlCounts
jg.getCorrectionFactorjg.getCorrectionFactor
jg.getDbajg.getDba
jg.getNormalizationCoefficientjg.getNormalizationCoefficient
jg.getSampleIdsjg.getSampleIds
jg.plotDeSeqjg.plotDeSeq
jg.plotDeSeqCombinedjg.plotDeSeqCombined
jg.plotMAjg.plotMA
jg.plotNormalizationjg.plotNormalization
jg.runDeSeqjg.runDeSeq
andrewholding/Brundle documentation built on Feb. 22, 2018, 2:56 a.m.