ff.PK.1.comp.oral.sd.CL: Structural model: one-compartment, oral absorption, single...
In andrewhooker/PopED: Population (and Individual) Optimal Experimental Design

ff.PK.1.comp.oral.sd.CL

R Documentation

Structural model: one-compartment, oral absorption, single bolus dose, parameterized using CL.

Description

This is a structural model function that encodes a model that is one-compartment, oral absorption, single bolus dose, parameterized using CL. The function is suitable for input to the create.poped.database function using the ff_fun or ff_file argument.

Usage

ff.PK.1.comp.oral.sd.CL(model_switch, xt, parameters, poped.db)

Arguments

`model_switch`	a vector of values, the same size as `xt`, identifying which model response should be computed for the corresponding xt value. Used for multiple response models.
`xt`	a vector of independent variable values (often time).
`parameters`	A named list of parameter values.
`poped.db`	a poped database. This can be used to extract information that may be needed in the model file.

Value

A list consisting of:

y the values of the model at the specified points.
poped.db A (potentially modified) poped database.

Examples

library(PopED)

############# START #################
## Create PopED database
## (warfarin example)
#####################################

## Warfarin example from software comparison in:
## Nyberg et al., "Methods and software tools for design evaluation 
##   for population pharmacokinetics-pharmacodynamics studies", 
##   Br. J. Clin. Pharm., 2014. 

## find the parameters that are needed to define from the structural model
ff.PK.1.comp.oral.sd.CL

## -- parameter definition function 
## -- names match parameters in function ff
sfg <- function(x,a,bpop,b,bocc){
  parameters=c(CL=bpop[1]*exp(b[1]),
               V=bpop[2]*exp(b[2]),
               KA=bpop[3]*exp(b[3]),
               Favail=bpop[4],
               DOSE=a[1])
  return(parameters) 
}

## -- Define model, parameters, initial design
poped.db <- create.poped.database(ff_fun=ff.PK.1.comp.oral.sd.CL,
                                  fg_fun=sfg,
                                  fError_fun=feps.prop,
                                  bpop=c(CL=0.15, V=8, KA=1.0, Favail=1), 
                                  notfixed_bpop=c(1,1,1,0),
                                  d=c(CL=0.07, V=0.02, KA=0.6), 
                                  sigma=c(prop=0.01),
                                  groupsize=32,
                                  xt=c( 0.5,1,2,6,24,36,72,120),
                                  a=c(DOSE=70))

############# END ###################
## Create PopED database
## (warfarin example)
#####################################


##  create plot of model without variability 
plot_model_prediction(poped.db)

## evaluate initial design
FIM <- evaluate.fim(poped.db) 
FIM
det(FIM)
get_rse(FIM,poped.db)

andrewhooker/PopED documentation built on Oct. 10, 2024, 12:08 a.m.