An R
package for interacting with UNC Systems Genetics genotype databases for the MUGA family of arrays.
For R
:
DBI
, RSQLite
-- generic databse machinerydata.table
-- efficient representation of in-memory tablesFor python
:
python
(>= 2.7)sqlite3
library(genodb)
options(genodb.MMDBPATH = "/path/to/my/database")
load("~/db/arrays/megamuga/snps.megamuga.Rdata")
ss <- fetch.samples("DBA/2%", exact = FALSE)
geno <- make.genotypes(ss$id, snps, by = "id", chr = "M")
summary(geno)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.