fetch.samples: Retrieve a list of samples by name or ID

In andrewparkermorgan/genodb: R Access to Genotype Databases

Usage

fetch.samples(ids = NULL, flags = NULL, bad.flags = NULL, group = NULL,
  by = c("name", "id"), exact = TRUE, strict.case = FALSE,
  verbose = TRUE, db = c("mm", "muga", "giga"), ...)

Arguments

ids

a vector of identifiers to search for; " \item bad.flagscharacters in flags column of database which indicaes a failed sample \item grouplimit to samples from a defined group \item bysearch by unique numeric ID ("id") or by human-readable sample name ("name") \item strict.caselogical; if TRUE, perform case-sensitive search \item verboseshow progress meter on console \item dbwhich database to search: must be one of "mm" (MegaMUGA), "muga", (MUGA) or "giga" (GigaMUGA) \item ...ignored

a data.frame with sample names, IDs and other information Retrieve a list of samples by name or ID

andrewparkermorgan/genodb documentation built on May 10, 2019, 11:09 a.m.