Man pages for andrewparkermorgan/sfsr
Utilities for Manipulating Allele Frequency Spectra
| aggregate_sfs | Aggreage an n-dimensional SFS into a single dimension |
| coarsen_sfs | Summarize SFS into 5 bins on each axis |
| diversity_stats | Calculate Watterson's estimator of theta |
| fixpoly | Count fixed versus polymorphic sites in each of K spectra |
| flatten_sfs | Convert SFS to vector representation for saving in a file |
| f_st | Calculate F_st (genetic differentiation among populations) |
| hka_test | Perform the HKA test. |
| marginalize_sfs | Get an SFS with reduced dimensions |
| mask_corners | Zero out frequency classes of fixed for ancestral or derived... |
| neutrality_tests | Calculate Tajima's D |
| noboots | Discard bootstrap replicates from an SFS |
| read_sfs | Read 'flattened' site frequency spectrum (SFS) from a file |
| repolarize_sfs | Reverse the polarity (ancestral vs derived) of an SFS. |
