neutrality_tests: Calculate Tajima's D

In andrewparkermorgan/sfsr: Utilities for Manipulating Allele Frequency Spectra

Description

Calculate Tajima's D

Calculate Fu and Li's D (with outgroup)

Calculate Fu and Li's F (with outgroup)

Calculate Achaz's Y* statistic

Usage

tajimaD(x, ...)

fuliD(x, ...)

fuliF(x, ...)

achazY(x, ...)

Arguments

x	an SFS
...	ignored

References

Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 105: 437-460.

Fu YX and Li WH (1993) Statistical tests of neutrality of mutations. Genetics 133: 693-709.

Fu YX and Li WH (1993) Statistical tests of neutrality of mutations. Genetics 133: 693-709.

Achaz G (2008) Testing for neutrality in samples with sequencing errors. Genetics 179: 1409-1424

andrewparkermorgan/sfsr documentation built on May 10, 2019, 11:10 a.m.