PPIfinder_getCompleteSymbols: Protein-Protein Interaction Identifier Functions

In andreysoares/nlpUtilityBelt: Auxiliary NLP tools

Description

The function "getCompleteSymbols" extracts all symbols and symbol synonyms from a data frame and finds their gene names. The function returns a data frame with a single column that lists all unique symbols, symbol synonyms, and gene names.

Usage

The function takes 
getCompleteSymbols(data)

Arguments

data	a data frame that contains contains columns of proteins and protein synonyms

Details

This function requires the 'org.Hs.eg.db' library and the getPatternList function.

Value

The function "getCompleteSymbols" returns a data frame with a single column that lists all unique symbols, symbol synonyms, and gene names.

Examples

## Not run: 

## get a single list of all symbols and names from a data frame
symbols <- getCompleteSymbols(data)


## End(Not run)

andreysoares/nlpUtilityBelt documentation built on May 6, 2019, 8:57 p.m.