getCompleteSymbols: Gene name finder

In andreysoares/nlpUtilityBelt: Auxiliary NLP tools

Description

getCompleteSymbols extracts all symbols from a data frame and finds their gene names, synonymns, and interpor protein, complex, and domain names. The function returns a data frame with a single column that lists all unique symbols, symbol synonyms, and names, and interpor protein, complex, and domain names. The species must be specified by the user as a string (e.g., "Human").

Usage

getCompleteSymbols(data, species)

Arguments

data	a data frame that contains contains gene symbols

Details

This function requires the mygene library and the getPatternList function.

Value

The function getCompleteSymbols returns a data frame with a single column that lists all unique symbols, symbol synonyms, and names, and interpor protein, complex, and domain names.

Examples

## get a single list of all symbols and names from a data frame
 symbols <- getCompleteSymbols(data)

andreysoares/nlpUtilityBelt documentation built on May 6, 2019, 8:57 p.m.