Files in andronekomimi/SNPVizualTools
Suite of R tools for custom SNP vizualisation

.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/main_functions.R R/secondary_functions.R codes/create_hic_arch_chrX.R codes/create_hist_lncrna.R codes/generate_chiapet_dataframe.R codes/generate_hic_dataframe.R codes/generate_lncrna_dataframe.R codes/heatmap_1.R codes/home_circos_ggplot_chiapet_inter.R codes/home_circos_ggplot_chiapet_intra.R
data/chr10_hmec_file_1.Rda
data/chr10_hmec_file_2.Rda
data/chr10_k562_file_1.Rda
data/chr10_k562_file_2.Rda
data/chr10_mitrans.Rda
data/chr10_sfd_k562_rep1.Rda
data/chr10_sfd_k562_rep2.Rda
data/chr10_sfd_mcf7_rep3.Rda
data/chr10_sfd_mcf7_rep4.Rda
data/chr10_sgp_k562_lane13.Rda
data/chr10_sgp_k562_lane13_inter.Rda
data/chr10_sgp_k562_lane24.Rda
data/chr10_sgp_k562_lane24_inter.Rda
data/chr10_sgp_mcf7_lane11.Rda
data/chr10_sgp_mcf7_lane11_inter.Rda
data/chr10_sgp_mcf7_lane23.Rda
data/chr10_sgp_mcf7_lane23_inter.Rda
data/chr11_hmec_file_1.Rda
data/chr11_hmec_file_2.Rda
data/chr11_k562_file_1.Rda
data/chr11_k562_file_2.Rda
data/chr11_mitrans.Rda
data/chr11_sfd_k562_rep1.Rda
data/chr11_sfd_k562_rep2.Rda
data/chr11_sfd_mcf7_rep3.Rda
data/chr11_sfd_mcf7_rep4.Rda
data/chr11_sgp_k562_lane13.Rda
data/chr11_sgp_k562_lane13_inter.Rda
data/chr11_sgp_k562_lane24.Rda
data/chr11_sgp_k562_lane24_inter.Rda
data/chr11_sgp_mcf7_lane11.Rda
data/chr11_sgp_mcf7_lane11_inter.Rda
data/chr11_sgp_mcf7_lane23.Rda
data/chr11_sgp_mcf7_lane23_inter.Rda
data/chr12_hmec_file_1.Rda
data/chr12_hmec_file_2.Rda
data/chr12_k562_file_1.Rda
data/chr12_k562_file_2.Rda
data/chr12_mitrans.Rda
data/chr12_sfd_k562_rep1.Rda
data/chr12_sfd_k562_rep2.Rda
data/chr12_sfd_mcf7_rep3.Rda
data/chr12_sfd_mcf7_rep4.Rda
data/chr12_sgp_k562_lane13.Rda
data/chr12_sgp_k562_lane13_inter.Rda
data/chr12_sgp_k562_lane24.Rda
data/chr12_sgp_k562_lane24_inter.Rda
data/chr12_sgp_mcf7_lane11.Rda
data/chr12_sgp_mcf7_lane11_inter.Rda
data/chr12_sgp_mcf7_lane23.Rda
data/chr12_sgp_mcf7_lane23_inter.Rda
data/chr13_hmec_file_1.Rda
data/chr13_hmec_file_2.Rda
data/chr13_k562_file_1.Rda
data/chr13_k562_file_2.Rda
data/chr13_mitrans.Rda
data/chr13_sfd_k562_rep1.Rda
data/chr13_sfd_k562_rep2.Rda
data/chr13_sfd_mcf7_rep3.Rda
data/chr13_sfd_mcf7_rep4.Rda
data/chr13_sgp_k562_lane13.Rda
data/chr13_sgp_k562_lane13_inter.Rda
data/chr13_sgp_k562_lane24.Rda
data/chr13_sgp_k562_lane24_inter.Rda
data/chr13_sgp_mcf7_lane11.Rda
data/chr13_sgp_mcf7_lane11_inter.Rda
data/chr13_sgp_mcf7_lane23.Rda
data/chr13_sgp_mcf7_lane23_inter.Rda
data/chr14_hmec_file_1.Rda
data/chr14_hmec_file_2.Rda
data/chr14_k562_file_1.Rda
data/chr14_k562_file_2.Rda
data/chr14_mitrans.Rda
data/chr14_sfd_k562_rep1.Rda
data/chr14_sfd_k562_rep2.Rda
data/chr14_sfd_mcf7_rep3.Rda
data/chr14_sfd_mcf7_rep4.Rda
data/chr14_sgp_k562_lane13.Rda
data/chr14_sgp_k562_lane13_inter.Rda
data/chr14_sgp_k562_lane24.Rda
data/chr14_sgp_k562_lane24_inter.Rda
data/chr14_sgp_mcf7_lane11.Rda
data/chr14_sgp_mcf7_lane11_inter.Rda
data/chr14_sgp_mcf7_lane23.Rda
data/chr14_sgp_mcf7_lane23_inter.Rda
data/chr15_hmec_file_1.Rda
data/chr15_hmec_file_2.Rda
data/chr15_k562_file_1.Rda
data/chr15_k562_file_2.Rda
data/chr15_mitrans.Rda
data/chr15_sfd_k562_rep1.Rda
data/chr15_sfd_k562_rep2.Rda
data/chr15_sfd_mcf7_rep3.Rda
data/chr15_sfd_mcf7_rep4.Rda
data/chr15_sgp_k562_lane13.Rda
data/chr15_sgp_k562_lane13_inter.Rda
data/chr15_sgp_k562_lane24.Rda
data/chr15_sgp_k562_lane24_inter.Rda
data/chr15_sgp_mcf7_lane11.Rda
data/chr15_sgp_mcf7_lane11_inter.Rda
data/chr15_sgp_mcf7_lane23.Rda
data/chr15_sgp_mcf7_lane23_inter.Rda
data/chr16_hmec_file_1.Rda
data/chr16_hmec_file_2.Rda
data/chr16_k562_file_1.Rda
data/chr16_k562_file_2.Rda
data/chr16_mitrans.Rda
data/chr16_sfd_k562_rep1.Rda
data/chr16_sfd_k562_rep2.Rda
data/chr16_sfd_mcf7_rep3.Rda
data/chr16_sfd_mcf7_rep4.Rda
data/chr16_sgp_k562_lane13.Rda
data/chr16_sgp_k562_lane13_inter.Rda
data/chr16_sgp_k562_lane24.Rda
data/chr16_sgp_k562_lane24_inter.Rda
data/chr16_sgp_mcf7_lane11.Rda
data/chr16_sgp_mcf7_lane11_inter.Rda
data/chr16_sgp_mcf7_lane23.Rda
data/chr16_sgp_mcf7_lane23_inter.Rda
data/chr17_hmec_file_1.Rda
data/chr17_hmec_file_2.Rda
data/chr17_k562_file_1.Rda
data/chr17_k562_file_2.Rda
data/chr17_mitrans.Rda
data/chr17_sfd_k562_rep1.Rda
data/chr17_sfd_k562_rep2.Rda
data/chr17_sfd_mcf7_rep3.Rda
data/chr17_sfd_mcf7_rep4.Rda
data/chr17_sgp_k562_lane13.Rda
data/chr17_sgp_k562_lane13_inter.Rda
data/chr17_sgp_k562_lane24.Rda
data/chr17_sgp_k562_lane24_inter.Rda
data/chr17_sgp_mcf7_lane11.Rda
data/chr17_sgp_mcf7_lane11_inter.Rda
data/chr17_sgp_mcf7_lane23.Rda
data/chr17_sgp_mcf7_lane23_inter.Rda
data/chr18_hmec_file_1.Rda
data/chr18_hmec_file_2.Rda
data/chr18_k562_file_1.Rda
data/chr18_k562_file_2.Rda
data/chr18_mitrans.Rda
data/chr18_sfd_k562_rep1.Rda
data/chr18_sfd_k562_rep2.Rda
data/chr18_sfd_mcf7_rep3.Rda
data/chr18_sfd_mcf7_rep4.Rda
data/chr18_sgp_k562_lane13.Rda
data/chr18_sgp_k562_lane13_inter.Rda
data/chr18_sgp_k562_lane24.Rda
data/chr18_sgp_k562_lane24_inter.Rda
data/chr18_sgp_mcf7_lane11.Rda
data/chr18_sgp_mcf7_lane11_inter.Rda
data/chr18_sgp_mcf7_lane23.Rda
data/chr18_sgp_mcf7_lane23_inter.Rda
data/chr19_hmec_file_1.Rda
data/chr19_hmec_file_2.Rda
data/chr19_k562_file_1.Rda
data/chr19_k562_file_2.Rda
data/chr19_mitrans.Rda
data/chr19_sfd_k562_rep1.Rda
data/chr19_sfd_k562_rep2.Rda
data/chr19_sfd_mcf7_rep3.Rda
data/chr19_sfd_mcf7_rep4.Rda
data/chr19_sgp_k562_lane13.Rda
data/chr19_sgp_k562_lane13_inter.Rda
data/chr19_sgp_k562_lane24.Rda
data/chr19_sgp_k562_lane24_inter.Rda
data/chr19_sgp_mcf7_lane11.Rda
data/chr19_sgp_mcf7_lane11_inter.Rda
data/chr19_sgp_mcf7_lane23.Rda
data/chr19_sgp_mcf7_lane23_inter.Rda
data/chr1_hmec_file_1.Rda
data/chr1_hmec_file_2.Rda
data/chr1_k562_file_1.Rda
data/chr1_k562_file_2.Rda
data/chr1_mitrans.Rda
data/chr1_sfd_k562_rep1.Rda
data/chr1_sfd_k562_rep2.Rda
data/chr1_sfd_mcf7_rep3.Rda
data/chr1_sfd_mcf7_rep4.Rda
data/chr1_sgp_k562_lane13.Rda
data/chr1_sgp_k562_lane13_inter.Rda
data/chr1_sgp_k562_lane24.Rda
data/chr1_sgp_k562_lane24_inter.Rda
data/chr1_sgp_mcf7_lane11.Rda
data/chr1_sgp_mcf7_lane11_inter.Rda
data/chr1_sgp_mcf7_lane23.Rda
data/chr1_sgp_mcf7_lane23_inter.Rda
data/chr20_hmec_file_1.Rda
data/chr20_hmec_file_2.Rda
data/chr20_k562_file_1.Rda
data/chr20_k562_file_2.Rda
data/chr20_mitrans.Rda
data/chr20_sfd_k562_rep1.Rda
data/chr20_sfd_k562_rep2.Rda
data/chr20_sfd_mcf7_rep3.Rda
data/chr20_sfd_mcf7_rep4.Rda
data/chr20_sgp_k562_lane13.Rda
data/chr20_sgp_k562_lane13_inter.Rda
data/chr20_sgp_k562_lane24.Rda
data/chr20_sgp_k562_lane24_inter.Rda
data/chr20_sgp_mcf7_lane11.Rda
data/chr20_sgp_mcf7_lane11_inter.Rda
data/chr20_sgp_mcf7_lane23.Rda
data/chr20_sgp_mcf7_lane23_inter.Rda
data/chr21_hmec_file_1.Rda
data/chr21_hmec_file_2.Rda
data/chr21_k562_file_1.Rda
data/chr21_k562_file_2.Rda
data/chr21_mitrans.Rda
data/chr21_sfd_k562_rep1.Rda
data/chr21_sfd_k562_rep2.Rda
data/chr21_sfd_mcf7_rep3.Rda
data/chr21_sfd_mcf7_rep4.Rda
data/chr21_sgp_k562_lane13.Rda
data/chr21_sgp_k562_lane13_inter.Rda
data/chr21_sgp_k562_lane24.Rda
data/chr21_sgp_k562_lane24_inter.Rda
data/chr21_sgp_mcf7_lane11.Rda
data/chr21_sgp_mcf7_lane11_inter.Rda
data/chr21_sgp_mcf7_lane23.Rda
data/chr21_sgp_mcf7_lane23_inter.Rda
data/chr22_hmec_file_1.Rda
data/chr22_hmec_file_2.Rda
data/chr22_k562_file_1.Rda
data/chr22_k562_file_2.Rda
data/chr22_mitrans.Rda
data/chr22_sfd_k562_rep1.Rda
data/chr22_sfd_k562_rep2.Rda
data/chr22_sfd_mcf7_rep3.Rda
data/chr22_sfd_mcf7_rep4.Rda
data/chr22_sgp_k562_lane13.Rda
data/chr22_sgp_k562_lane13_inter.Rda
data/chr22_sgp_k562_lane24.Rda
data/chr22_sgp_k562_lane24_inter.Rda
data/chr22_sgp_mcf7_lane11.Rda
data/chr22_sgp_mcf7_lane11_inter.Rda
data/chr22_sgp_mcf7_lane23.Rda
data/chr22_sgp_mcf7_lane23_inter.Rda
data/chr2_hmec_file_1.Rda
data/chr2_hmec_file_2.Rda
data/chr2_k562_file_1.Rda
data/chr2_k562_file_2.Rda
data/chr2_mitrans.Rda
data/chr2_sfd_k562_rep1.Rda
data/chr2_sfd_k562_rep2.Rda
data/chr2_sfd_mcf7_rep3.Rda
data/chr2_sfd_mcf7_rep4.Rda
data/chr2_sgp_k562_lane13.Rda
data/chr2_sgp_k562_lane13_inter.Rda
data/chr2_sgp_k562_lane24.Rda
data/chr2_sgp_k562_lane24_inter.Rda
data/chr2_sgp_mcf7_lane11.Rda
data/chr2_sgp_mcf7_lane11_inter.Rda
data/chr2_sgp_mcf7_lane23.Rda
data/chr2_sgp_mcf7_lane23_inter.Rda
data/chr3_hmec_file_1.Rda
data/chr3_hmec_file_2.Rda
data/chr3_k562_file_1.Rda
data/chr3_k562_file_2.Rda
data/chr3_mitrans.Rda
data/chr3_sfd_k562_rep1.Rda
data/chr3_sfd_k562_rep2.Rda
data/chr3_sfd_mcf7_rep3.Rda
data/chr3_sfd_mcf7_rep4.Rda
data/chr3_sgp_k562_lane13.Rda
data/chr3_sgp_k562_lane13_inter.Rda
data/chr3_sgp_k562_lane24.Rda
data/chr3_sgp_k562_lane24_inter.Rda
data/chr3_sgp_mcf7_lane11.Rda
data/chr3_sgp_mcf7_lane11_inter.Rda
data/chr3_sgp_mcf7_lane23.Rda
data/chr3_sgp_mcf7_lane23_inter.Rda
data/chr4_hmec_file_1.Rda
data/chr4_hmec_file_2.Rda
data/chr4_k562_file_1.Rda
data/chr4_k562_file_2.Rda
data/chr4_mitrans.Rda
data/chr4_sfd_k562_rep1.Rda
data/chr4_sfd_k562_rep2.Rda
data/chr4_sfd_mcf7_rep3.Rda
data/chr4_sfd_mcf7_rep4.Rda
data/chr4_sgp_k562_lane13.Rda
data/chr4_sgp_k562_lane13_inter.Rda
data/chr4_sgp_k562_lane24.Rda
data/chr4_sgp_k562_lane24_inter.Rda
data/chr4_sgp_mcf7_lane11.Rda
data/chr4_sgp_mcf7_lane11_inter.Rda
data/chr4_sgp_mcf7_lane23.Rda
data/chr4_sgp_mcf7_lane23_inter.Rda
data/chr5_hmec_file_1.Rda
data/chr5_hmec_file_2.Rda
data/chr5_k562_file_1.Rda
data/chr5_k562_file_2.Rda
data/chr5_mitrans.Rda
data/chr5_sfd_k562_rep1.Rda
data/chr5_sfd_k562_rep2.Rda
data/chr5_sfd_mcf7_rep3.Rda
data/chr5_sfd_mcf7_rep4.Rda
data/chr5_sgp_k562_lane13.Rda
data/chr5_sgp_k562_lane13_inter.Rda
data/chr5_sgp_k562_lane24.Rda
data/chr5_sgp_k562_lane24_inter.Rda
data/chr5_sgp_mcf7_lane11.Rda
data/chr5_sgp_mcf7_lane11_inter.Rda
data/chr5_sgp_mcf7_lane23.Rda
data/chr5_sgp_mcf7_lane23_inter.Rda
data/chr6_hmec_file_1.Rda
data/chr6_hmec_file_2.Rda
data/chr6_k562_file_1.Rda
data/chr6_k562_file_2.Rda
data/chr6_mitrans.Rda
data/chr6_sfd_k562_rep1.Rda
data/chr6_sfd_k562_rep2.Rda
data/chr6_sfd_mcf7_rep3.Rda
data/chr6_sfd_mcf7_rep4.Rda
data/chr6_sgp_k562_lane13.Rda
data/chr6_sgp_k562_lane13_inter.Rda
data/chr6_sgp_k562_lane24.Rda
data/chr6_sgp_k562_lane24_inter.Rda
data/chr6_sgp_mcf7_lane11.Rda
data/chr6_sgp_mcf7_lane11_inter.Rda
data/chr6_sgp_mcf7_lane23.Rda
data/chr6_sgp_mcf7_lane23_inter.Rda
data/chr7_hmec_file_1.Rda
data/chr7_hmec_file_2.Rda
data/chr7_k562_file_1.Rda
data/chr7_k562_file_2.Rda
data/chr7_mitrans.Rda
data/chr7_sfd_k562_rep1.Rda
data/chr7_sfd_k562_rep2.Rda
data/chr7_sfd_mcf7_rep3.Rda
data/chr7_sfd_mcf7_rep4.Rda
data/chr7_sgp_k562_lane13.Rda
data/chr7_sgp_k562_lane13_inter.Rda
data/chr7_sgp_k562_lane24.Rda
data/chr7_sgp_k562_lane24_inter.Rda
data/chr7_sgp_mcf7_lane11.Rda
data/chr7_sgp_mcf7_lane11_inter.Rda
data/chr7_sgp_mcf7_lane23.Rda
data/chr7_sgp_mcf7_lane23_inter.Rda
data/chr8_hmec_file_1.Rda
data/chr8_hmec_file_2.Rda
data/chr8_k562_file_1.Rda
data/chr8_k562_file_2.Rda
data/chr8_mitrans.Rda
data/chr8_sfd_k562_rep1.Rda
data/chr8_sfd_k562_rep2.Rda
data/chr8_sfd_mcf7_rep3.Rda
data/chr8_sfd_mcf7_rep4.Rda
data/chr8_sgp_k562_lane13.Rda
data/chr8_sgp_k562_lane13_inter.Rda
data/chr8_sgp_k562_lane24.Rda
data/chr8_sgp_k562_lane24_inter.Rda
data/chr8_sgp_mcf7_lane11.Rda
data/chr8_sgp_mcf7_lane11_inter.Rda
data/chr8_sgp_mcf7_lane23.Rda
data/chr8_sgp_mcf7_lane23_inter.Rda
data/chr9_hmec_file_1.Rda
data/chr9_hmec_file_2.Rda
data/chr9_k562_file_2.Rda
data/chr9_mitrans.Rda
data/chr9_sfd_k562_rep1.Rda
data/chr9_sfd_k562_rep2.Rda
data/chr9_sfd_mcf7_rep3.Rda
data/chr9_sfd_mcf7_rep4.Rda
data/chr9_sgp_k562_lane13.Rda
data/chr9_sgp_k562_lane13_inter.Rda
data/chr9_sgp_k562_lane24.Rda
data/chr9_sgp_k562_lane24_inter.Rda
data/chr9_sgp_mcf7_lane11.Rda
data/chr9_sgp_mcf7_lane11_inter.Rda
data/chr9_sgp_mcf7_lane23.Rda
data/chr9_sgp_mcf7_lane23_inter.Rda
data/chrM_sgp_k562_lane13.Rda
data/chrM_sgp_k562_lane13_inter.Rda
data/chrM_sgp_k562_lane24.Rda
data/chrM_sgp_k562_lane24_inter.Rda
data/chrM_sgp_mcf7_lane11.Rda
data/chrM_sgp_mcf7_lane11_inter.Rda
data/chrM_sgp_mcf7_lane23.Rda
data/chrM_sgp_mcf7_lane23_inter.Rda
data/chrX_hmec_file_1.Rda
data/chrX_hmec_file_2.Rda
data/chrX_k562_file_1.Rda
data/chrX_k562_file_2.Rda
data/chrX_sfd_k562_rep1.Rda
data/chrX_sfd_k562_rep2.Rda
data/chrX_sfd_mcf7_rep3.Rda
data/chrX_sfd_mcf7_rep4.Rda
data/chrX_sgp_k562_lane13.Rda
data/chrX_sgp_k562_lane13_inter.Rda
data/chrX_sgp_k562_lane24.Rda
data/chrX_sgp_k562_lane24_inter.Rda
data/chrX_sgp_mcf7_lane11.Rda
data/chrX_sgp_mcf7_lane11_inter.Rda
data/chrX_sgp_mcf7_lane23.Rda
data/chrX_sgp_mcf7_lane23_inter.Rda
data/lncrna_expr.Rda
inst/init.file
man/drawAnnotations.Rd man/drawArchs.Rd man/drawSNPs.Rd man/getDataOverview.Rd man/loadChrData.Rd man/mergeRanges.Rd man/setHighLight.Rd man/setStudyRange.Rd
tests/init.file
vignettes/basics.Rmd
vignettes/init.file
andronekomimi/SNPVizualTools documentation built on June 3, 2017, 7:05 p.m.