drawArchs: Prepare tracks to plot them

In andronekomimi/SNPVizualTools: Suite of R tools for custom SNP vizualisation

Description

Prepare tracks to plot them

Usage

drawArchs(ranges_list, highlight_range_list = NULL)

Arguments

ranges_list	list of GenomicRanges generated with the functions getDataOverview
highlight_range_list	list of GenomicRange generated with the function setHighLight

Value

list of 3 lists containing GenomicRanges representing data in the current study range : arch, circos, lncrna

Examples

current_chr <- "chr12"
my.data <- loadChrData()
current_range <- setStudyRange(27950000, 28735000)
my.ranges <- getDataOverview()
specific_range1 <- setHighLight(28111017,28127138,"alpha")
specific_range2 <- setHighLight(28284682,28287682,"alpha")
specific_range3 <- setHighLight(28284682,28287682,"color")

arch <- drawArchs(my.ranges$arch, list(specific_range1,specific_range2,
specific_range3))
tracks(arch) + xlim(current_range)

andronekomimi/SNPVizualTools documentation built on May 10, 2019, 11:43 a.m.