call_phewas: call_phewas

Description Usage Arguments

Description

Launches the shiny webapp for multimodal PheWAS

Usage

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call_phewas(.config_file = NULL, .local = FALSE, .bio_file = NULL,
  .concepts_file = NULL, .icd_file = NULL, ...)

Arguments

.config_file:

config file as described for the DWHtools2 package (https://github.com/aneuraz/DWHtools2)

.local:

to load local files instead of extracting data from a database

.bio_file:

RData file containing a 'bio' data.frame of biological test results data

.concepts_file:

RData file containing a 'concepts' data.frame of UMLS concepts

.icd_file:

RData file containing a 'cim' data.frame of ICD codes


aneuraz/multimodalPhewas documentation built on May 29, 2019, 4:50 p.m.