compute_cim_phewas: compute_cim_phewas
In aneuraz/multimodalPhewas: multiWAS

computes the PheWAS analysis on ICD codes

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compute_cim_phewas(cim, patients, cim_min_occur = 5, zero_controls_add = 2,
  with_boot = FALSE, perm = 1000, boot_all = FALSE,
  fdr_threshold = 0.05, progress = NULL, cores = 1)

`cim`	cim data.frame from the 'get_data_from_num' function
`patients`	patients data.frame from the 'get_data_from_num' function
`cim_min_occur`	integer. minimum number of occurrences of the biological test result in the dataset to be analyzed
`zero_controls_add`	integer. number of simulated patients to add to the control group for a given if there is no occurrence of this concept in the control group. This trick allows to compute a pvalue in this situation.
`with_boot`	logical. perform a bootstrap on the results
`perm`	integer. number of permutations for the bootstrap
`boot_all`	logical. perform a bootstrap on all the results or only on the results with FDR corrected p.value < fdr_threshold
`fdr_threshold`	maximum FDR corrected p.value to perform the bootstrap
`progress`	progress bar object