hpaExport: Export the subset data

In anhtr/HPAanalyze: Retrieve and analyze data from the Human Protein Atlas

Export the subset data

Description

Export the list object generated by hpaSubset() into xlsx format. Due to the size of some HPA datasets, as well as the limitation of the output format, exporting the full datasets generated by hpaDownload() is not recommended. This is a convenient wrapper for 'write.' functions.

Usage

hpaExport(data, fileName, fileType = "xlsx")

Arguments

data	Input the list object generated by hpaSubset()
fileName	A string indicate the desired output file name. Do not include file extension such as '.xlsx'.
fileType	The format as which the data will be exported. Choose one of these options: 'xlsx', 'csv' and 'tsv'.

Value

• 'xlsx': return one .xlsx file named 'fileName.xlsx'. One individual sheet for each dataset in the input list object.

• 'csv': return .csv files, one for each dataset in the input list object, named 'fileName_datasetName.csv'

• 'tsv': return .tsv files, one for each dataset in the input list object, named 'fileName_datasetName.tsv'

See Also

Other downloadable datasets functions: hpaDownload(), hpaSubset()

Examples

  downloadedData <- hpaDownload(downloadList='histology', version='example')
  geneList <- c('TP53', 'EGFR')
  tissueList <- c('breast', 'cerebellum', 'skin 1')
  cancerList <- c('breast cancer', 'glioma', 'melanoma')

  subsetData <- hpaSubset(data=downloadedData,
                           targetGene=geneList,
                           targetTissue=tissueList,
                           targetCancer=cancerList)
  hpaExport(data=subsetData,
            fileName='TP53_EGFR_in_tissue_cancer.xlsx',
            fileType='xlsx')

anhtr/HPAanalyze documentation built on June 3, 2023, 2:19 a.m.