Files in anilchalisey/rseqR

RNA-seq data processing pipeline

.Rbuildignore

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/annotate_data.R R/build_index.R R/check_sample.R R/deseq2_analysis.R R/edger_analysis.R R/exploratory_analysis_deseq2.R R/exploratory_analysis_edger.R R/limma_voom_analysis.R R/make_MA.R R/make_PCA.R R/make_heatmap.R R/make_scree.R R/make_upset.R R/make_volcano.R R/pathway_analysis.R R/read_salmon.R R/run_dea.R R/run_fastqc.R R/run_multiqc.R R/run_salmon.R R/run_tximport.R R/sanity_check.R

R/sysdata.rda

R/trim_fastq.R R/utils-pipe.R R/utils.R README.Rmd README.md

_pkgdown.yml

docs/LICENSE-text.html

docs/_config.yml

docs/authors.html

docs/docsearch.css

docs/docsearch.js

docs/favicon.ico

docs/index.html

docs/link.svg

docs/logo.png

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/annotate_data.html

docs/reference/build_index.html

docs/reference/check_sample.html

docs/reference/deseq2_analysis.html

docs/reference/dopar.html

docs/reference/edger_analysis.html

docs/reference/exploratory_analysis_deseq2.html

docs/reference/exploratory_analysis_edger.html

docs/reference/figures/logo.png

docs/reference/index.html

docs/reference/limma_voom_analysis.html

docs/reference/make_MA.html

docs/reference/make_PCA.html

docs/reference/make_heatmap.html

docs/reference/make_scree.html

docs/reference/make_upset.html

docs/reference/make_volcano.html

docs/reference/pathway_analysis.html

docs/reference/pipe.html

docs/reference/read_salmon.html

docs/reference/run_dea.html

docs/reference/run_fastqc.html

docs/reference/run_multiqc.html

docs/reference/run_salmon.html

docs/reference/run_tximport.html

docs/reference/sanity_check.html

docs/reference/trim_fastq.html

docs/sitemap.xml

inst/extdata/MULTIQC/Logo.png

inst/extdata/MULTIQC/multiqc_config.yaml

inst/extdata/paired-example.txt

inst/extdata/quants-example.txt

inst/extdata/single-example.txt

man/annotate_data.Rd man/build_index.Rd man/check_sample.Rd man/deseq2_analysis.Rd man/edger_analysis.Rd man/exploratory_analysis_deseq2.Rd man/exploratory_analysis_edger.Rd

man/figures/logo.png

man/limma_voom_analysis.Rd man/make_MA.Rd man/make_PCA.Rd man/make_heatmap.Rd man/make_scree.Rd man/make_upset.Rd man/make_volcano.Rd man/pathway_analysis.Rd man/pipe.Rd man/read_salmon.Rd man/run_dea.Rd man/run_fastqc.Rd man/run_multiqc.Rd man/run_salmon.Rd man/run_tximport.Rd man/sanity_check.Rd man/trim_fastq.Rd

rseqR.Rproj

anilchalisey/rseqR documentation built on May 25, 2019, 2:25 p.m.