deseq2_analysis: Run DESeq2 analysis on RNA-seq count data

In anilchalisey/rseqR: RNA-seq data processing pipeline

Description

Run DESeq2 analysis on RNA-seq count data

Usage

deseq2_analysis(metadata, species)

Arguments

metadata	list created by sanity_check and with raw count data stored in metadata$count$A and length-adjusted count data stored in metadata$count$B. Created as part of run_dea
species	character string specifying the name of the species. Only 'human', and 'mouse' are supported at present. [DEFAULT = human].

anilchalisey/rseqR documentation built on May 25, 2019, 2:25 p.m.