get_obis_recs: Query OBIS for occurence data

In annakrystalli/OBIShmpr: Link and query OBIS occurence data with a variety of marine habitat data

Description

Query OBIS for occurence data

Usage

get_obis_recs(
  sp_id,
  validate_sp_id = FALSE,
  fields = c("decimalLongitude", "decimalLatitude", "minimumDepthInMeters",
    "maximumDepthInMeters", "depth", "eventDate", "year", "month", "scientificName",
    "aphiaID"),
  geometry = NULL,
  ignore_failures = FALSE
)

Arguments

sp_id	a valid WoRMS aphiaID
validate_sp_id	whether to check for validity of aphiaID on OBIS
fields	fields to return from OBIS query. Defaults to c("decimalLongitude", "decimalLatitude","minimumDepthInMeters", "maximumDepthInMeters", "depth", "eventDate", "year", "month", "scientificName", "aphiaID")
geometry	an sf object. Queries will be faster if the geometry is simple and restricted in space.
ignore_failures	whether to through an error or return NULL for queries that return no obis records.

Value

a tibble of OBIS occurence records for sp_id.

Examples

get_obis_recs(sp_id = 325567)

annakrystalli/OBIShmpr documentation built on Oct. 4, 2020, 6:37 a.m.