| accept | Document Acceptance of an R Installation |
| acceptance | List the History of Acceptance. |
| addl | Calculate a NONMEM ADDL data item from explicit records. |
| align.decimal | Format Numeric Vectors Specially |
| as.best | Coerce data unambiguously to numeric or character |
| as.comment | Create and Manipulate Comment Objects |
| as.data.frame.block | Convert a Block of Lines to Data Frame |
| as.define | Work with Data Definitions |
| as.init | Work with Initial Estimates as Objects |
| as.keyed | Create and Manipulate Keyed Data Frames |
| as.nm | Create and Manipulate nm Objects |
| as.nmctl | Create, Manipulate, Read, and Write NONMEM Control Streams |
| as.pxml | Convert a Param File to XML |
| as.second | Interconvert Nominal Time Units |
| as.spec | Create and Manipulate spec Objects |
| as.unilog.run | Create a Run Log for NONMEM7 using NONMEM6 Format |
| as.xml | Represent an Object as XML |
| attribute | Encode an Attribute for an XML Open Tag |
| AUC | Calculate AUC Using the Trapezoidal Method |
| aug | Augment a List-like Object |
| backtrans | Back-transform Columns in a Data Frame |
| bin | Calculate Bin Sizes and Limits for a Vector |
| bounds | Calculate Normal Quantiles at Boundaries of Probability... |
| bracket | Create an XML Tag |
| breaks | Identify Boundaries Between Sets of Elements |
| bundleRead | Read Data Files from a Directory into a List |
| cast-methods | Methods for Function 'cast' in Package 'reshape' |
| check.subjects | Summarize Columns of Subject Data |
| CLNR | Delete Files and Directories |
| closers | Calculate Closing Text for Nested Script Levels |
| codes | Recover Metadata from spec Objects and their Components |
| colname | Change Selected Names |
| combinations | Display Combinations of Column Values |
| command | Format a Latex Command |
| compileflag | Develop a Value for a Compiler Resource on the Grid |
| compiler | Extract the Compiler Name from an NMQual Configuration File |
| compute.cwres | Compute the Conditional Weighted Residuals |
| config | Identify the Configuration File in an NMQual-mediated NONMEM... |
| constant | Test for Nested Factors |
| contains | Test a Character Vector for Occurences of a Pattern |
| convertLines | Convert Line Endings |
| css | Calculate One-Compartment Model Properties |
| c.temporal | Support for timepoint Classes |
| cv | Compute Coefficient of Variation for Normal and Log-Normal... |
| dataFormat | Integrate NONMEM Data for Plotting |
| dataSynthesis | Build a Standard Plotting Data Set for a Given NONR Run |
| diagnosticPlots | Create Diagnostic Plots |
| digest | Diagnose Static Data Relationships |
| electronicAppendix | Make an FDA-style Electronic Appendix from a Subversioned... |
| encode | Encode Factor-like Levels and Labels as a Simple String |
| episcript | Run an Epilog Script in a Pre-populated Environment |
| extensions | Instantiate Records Implied By Range Data |
| extract | Extract a Parenthetically-grouped Substring of a Regular... |
| filename | Construct a Canonical File Name |
| findNonmemCommand | Find Paths to Available Nonmem Commands |
| first | Identify Elements Within Cells Meeting Some Instance of a... |
| fixedwidth | Apply Fixed-width Formatting to a Data Frame |
| fixProblem | Clean Up a Control Stream |
| flag | Create and Manipulate Flags |
| ftable2data.frame | Convert ftable to data.frame |
| getCovs | Return Non-commented Non-duplicated Rows of a NONMEM Data Set |
| getCwres | Return the Conditional Weighted Residuals Pertinent to a... |
| getdname | Extract the Path and File from the DATA Block in the Control... |
| getPars | Return the Non-duplicated (ID) Rows Corresponding to the... |
| getTabs | Return the Observation Rows (EVID==0) Corresponding to the... |
| glue | Paste Items with No Space |
| groupnames | Construct a Single Vector of Group Names from Possibly... |
| half.matrix | Interconvert Between a Symmetric Matrix and a Triangular... |
| hash | Supply Comment Characters with Output |
| helpAdminister | metrumrg: Administrative |
| helpBrowse | metrumrg: Extended Examples |
| helpClasses | metrumrg: Data Classes |
| helpDataFrame | metrumrg: Working with Data Frames |
| helpList | metrumrg: Defined Functions |
| helpMatrix | metrumrg: Working with Matrices |
| helpModel | metrumrg: Modeling |
| helpPharmacometric | metrumrg: Pharmacometrics |
| helpPrepare | metrumrg: Data Preparation |
| helpQuantify | metrumrg: Statistics |
| helpReport | metrumrg: Reporting |
| helpSimulate | metrumrg: Simulation |
| helpStrategic | metrumrg: Strategic Data Manipulation |
| helpVector | metrumrg: Working with Vectors |
| helpVisualize | metrumrg: Plotting |
| ibw | Calculate Various Clinical Indicators |
| index | Visualize Static Data Relationships |
| inner.data.frame | Limit Data to Inner Quantiles by Imputing NA. |
| is.alpha | Test For Alphabetic Content |
| is.defined | Test Whether Values are Defined |
| is.diagonal | Analyze Parameter Labels |
| is.latex.token | Determine if String is Valid Latex Command or Environment |
| is.one.nonalpha | Check That Each Element is a Single Non-letter |
| is.square.matrix | Test Whether a Matrix is Square |
| isSubversioned | Check Whether Files Are Subversioned |
| isSubversionedFile | Check If Single file Is Subversioned |
| iterations | Harvest Iteration Statistics from NONMEM Output and Convert... |
| justUnits | Extract Substring of Wiki Math |
| keyed-class | Class '"keyed"' |
| latest | Identify the Latest Variants of Each File as Distinguished by... |
| latex.args | Format Latex Command Arguments |
| latex.options | Format Latex Command Options |
| locf | Impute Missing Vector Values |
| lookup | Lookup Alternate Versions of Parameter Codes |
| ltable.data.frame | Convert a Data Frame to a Latex Table |
| map | Map One Set of Values to Another |
| matches | Test the Correspondence between a Table and a Specification |
| melt.keyed | Melt a Keyed Data Frame |
| metaMerge | Recursively Merge Multiple Tables |
| metaSub.character | Create Replicate Text files with Systematic Substitutions |
| metrumrg-package | Pharmacometric Tools for Data Preparation, Modeling,... |
| metrumrgURL | View a metrumrg Package File |
| monotonic | Determine Whether a Vector is Monotonic |
| naInContext | Display Missing Values in Context |
| nasum | Count Number of 'NA' Values in List Items |
| ncomma | Report Names as Comma-delimited |
| nest | Nest an XML Fragment in a Parent Element |
| nix | Identify Unix-like Platforms |
| nm.pl | Build Commands to Invoke NONMEM |
| nmPlots | An Extensible List of Diagnostic Plots for nm Objects |
| nmVersion | Extract the NONMEM Version from an NMQual Configuration File |
| NONR | Run NONMEM |
| omegacor | Extract NONMEM Covariance or Correlation Matrices |
| ops | Operator Syntax for Joining Keyed Data Frames |
| ord.matrix | Give the Order of a Symmetric Matrix or Half Matrix |
| packageCheck | Load a Package and Run Package-level Examples for Testing... |
| panel.densitystrip | Display Distributions with Respect to Reference Values |
| panel.hist | Plot Histograms Flexibly |
| panel.stratify | Handle Each Level of a Stripplot Separately |
| parameter2wiki | Convert Parameter Labels to Wikimath |
| params | List Documented Parameters |
| parens | Wrap Text in Parentheses |
| partab | Construct a Parameter Table |
| percent | Calculate Percent. |
| plotFileName | Make a Name for a Diagnostic Plot File |
| plot.nm | Plot An Object of Class nm |
| PLOTR | Create Diagnostic Plots for a NONMEM Run |
| pool | Test Set Relations Among Two Vectors |
| posmat | Coerce a Matrix to be Positive Definite |
| prev | Check Some Properties of Vectors |
| purge.dir | Purge a Directory |
| purge.files | Purge Files |
| qstat | Invoke SGE qstat |
| qsub | Build Commands to Invoke SGE qsub |
| random | Select Random Members of an Object |
| reapply | Apply a Function Across Cells of an Indexed Vector, Giving an... |
| resample.data.frame | Create Replicate Data Sets by Stratified Sampling |
| rinvchisq | Generate Inverse Chi-square Distribution |
| riwish | Generate Inverse Wishart Distribution |
| rlog | Generate a Combined Run Log from Multiple NONMEM Runs |
| row2tabular | Format Vector for Latex Tabular Row |
| runCommand | Issue the System Call That Invokes NONMEM |
| runlog | Convert Model Metadata to Various Formats |
| runNonmem | Process a Request for NONMEM Invocation |
| runstate | Detect State of a Run Using File Existence Criteria |
| safe.call | Call a Function Safely |
| safeQuote | Single-quote Conditionally |
| setCwres | Append Conditional Weighted Residuals to an Appropriate File |
| sets | Binary Operators for Set Relations |
| shuffle | Move the Columns of a Data Frame Relative to Each Other |
| simblock | Generate Random Effect Deviates for Simulation |
| simpar | Create Parameters for Simulation with Uncertainty |
| snap | Coerce Values to Nearest of Candidates |
| sortedInstall | Install Local Source Packages Sorted by Dependency |
| spaces | Generate a String of Spaces |
| specfile | Determine the Expected Path to a Specification File |
| specification | Create a Data Specification Corresponding to a Particular... |
| sqrtm | Help Calculate CWRES |
| stableMerge | Execute a Stable Left Join |
| star | Replace Asterisk in x With y |
| static | Return the static portion of an object. |
| strain | Reduce x to Those Elements that Occur in Options |
| summary.nm | Analyze an NM Object |
| superset | Augment NONMEM Input with Table Output |
| supp | Merge CDISC Supplemental Data |
| svnIsText | Check Whether Subversioned Files are Text. |
| svnMarkAsNonText | Mark Subversioned Files as Non-text. |
| svnMarkAsText | Mark Subversioned Files as Text |
| svnMimeType | Determine Mime Type for Multiple Files |
| svnPropGet | Get Subversion Property for a Vector of Files |
| svnPropGetFile | Get Subversion Property for a Single File |
| svnPropSet | Set a Property on a Vector of Subversioned Files |
| svnPropSetFile | Set a Property on a Subversioned File |
| svnSetMimeType | Set Subversion Mime Type |
| synthesis | Sequentially Left-join an Arbitrary Number of Data Frames,... |
| tabular.data.frame | Convert a Data Frame to a Latex Tabular Environment, Latex... |
| tabularformat | Create the Format String for Latex Tabular Environment |
| tagvalue | Convert List to Tag and Value Format |
| temporal | Temporal Classes with Selective Defaults |
| text2decimal | Convert Mixed Text to Decimal |
| Tmax | Calculate Tmax |
| Tmin | Calculate Tmin |
| toSAS | Convert Timepoint to SAS Format |
| totitle | Convert Text to Title Case |
| tweak | Adjust Values |
| variants | Locate Variants of a File in Distinctive Subdirectories |
| wikiparse | Parse Wikimath |
| win | Identify Windows Platforms |
| wrap | Wrap Text in a Latex Environment |
| xpath | Extract Value of an xpath Expression from and XML File |
| xpath2frame | Extract Indexed Values from XML |
| xyplot.ext | Plot the Parameter Search History for a NONMEM 7 Run |
