as.unilog.run: Create a Run Log for NONMEM7 using NONMEM6 Format
In anniejw6/metrumrg: Pharmacometric Tools for Data Preparation, Modeling, Simulation, and Reporting

Description Usage Arguments Details Value Author(s) References See Also

metrumrg includes an INFN routine for NONMEM6 and earlier that creates a comma-separated listing of parameter estimates and their percent relative standard errors. This function emulates that data, using the ‘.ext’ file produced under NONMEM7. as.runlog.unilog converts the output to the format used for NONMEM6. The default for tool changed from 'nm6' to 'nm7' at version 5.18.

as.unilog.run(
	run,
	logfile='NonmemRunLog.csv',
	outfile=paste(run,'lst',sep='.'),
	extfile=file.path(
		dirname(outfile),
		paste(run,'ext',sep='.')
	),
	tool='nm7',
	...
)

`run`	name of the NONMEM run, typically integer
`logfile`	path for the NONMEM run log file
`outfile`	path for the NONMEM output file, typically ‘run.lst’
`extfile`	path for the NONMEM estimates, by default ‘run.ext’
`tool`	currently ‘nm7’
`...`	passed to other functions

The ‘ext’ file is digested. In particular the rows labeled -1000000000 and -1000000001 are taken as the parameter estimates and standard errors, respectively. The minimization status (min) is either 0 (minimized) or 1 for NONMEM7, which is less informative than for NONMEM6. The covariance status (cov) is normally 0, or (v. 5.56 and later) -1 if not requested. It will be 1 if covariance was requested but no standard errors appear in extfile (as for NONMEM6).

data.frame with columns tool, run, parameter, moment, value.

Tim Bergsma

http://metrumrg.googlecode.com