factor.responses: Factor responses

In antagomir/netresponse: Functional Network Analysis

Factor responses

Description

List responses for each level of the given factor

Usage

factor.responses(
  annotation.vector,
  groupings,
  method = "hypergeometric",
  min.size = 2,
  data = NULL
)

Arguments

annotation.vector	annotation vector with discrete factor levels, and named by the samples
groupings	List of groupings. Each model should have a sample-cluster assignment matrix qofz, or a vector of cluster indices named by the samples.
method	method for enrichment calculation
min.size	minimum sample size for a response
data	data (samples x features; or a vector in univariate case)

Value

List with each element corresponding to one factor level and listing the responses according to association strength

Author(s)

Contact: Leo Lahti [e-mail]

References

See citation('netresponse')

Examples

res <- factor.responses(annotation.vector = NULL, groupings = NULL)

antagomir/netresponse documentation built on March 30, 2023, 7:24 a.m.