plot_response: plot_response

In antagomir/netresponse: Functional Network Analysis

plot_response

Description

Plot a specific transcriptional response for a given subnetwork. TRUE, colors = TRUE, plot_type = 'twopi', ...)

Usage

plot_response(
  x,
  mynet,
  mybreaks,
  mypalette,
  plot_names = TRUE,
  colors = TRUE,
  plot_type = "twopi",
  ...
)

Arguments

x	A numerical vector, or NULL.
mynet	Binary matrix specifying the interactions between nodes.
mybreaks	Specify breakpoints for color plot_
mypalette	Specify palette for color plot_
plot_names	Plot node names (TRUE) or indices (FALSE).
colors	Plot colors. Logical.
plot_type	Network plot mode. For instance, 'neato' or 'twopi'.
...	Further arguments for plot function.

Value

Used for its side-effects.

Author(s)

Leo Lahti, Olli-Pekka Huovilainen and Antonio Gusmao. Maintainer: Leo Lahti <[e-mail]>

References

L. Lahti et al.: Global modeling of transcriptional responses in interaction networks. Submitted.

Examples

#tmp <- plot_response(model, mynet, 
#  \tmaintext = paste('Subnetwork', subnet.id))

antagomir/netresponse documentation built on March 30, 2023, 7:24 a.m.