Man pages for anthony-aylward/npbin
| atac | Table of allele counts etc. from an ATAC-seq dataset. |
| betaTrim_mle | Efron null model |
| beta_variance | Calculate beta variance from shape parameters |
| bsplfun | Create B-spline. |
| bsplfun.updt | Update B-spline. |
| convert_to_data_table | Convert input data frame to a data table |
| ctcf | Table of allele counts etc. from a ChIP-seq dataset. |
| dbetabinom.vec | Beta binomial density. |
| dnase | Table of allele counts etc. from a DNAse-seq dataset. |
| ebBeta | Wrap alternative models. |
| emBinBspl | NPBin model. |
| emBspl | Direct B-spline estimation. |
| estNull | Null model estimation |
| estNull1 | Null model estimation |
| estNull2 | Null model estimation |
| evBspl | B-spline evaluation. |
| evBsplDrv | B-spline derivative evaluation. |
| getDesignMtx | Design matrix extraction |
| get_header_indices | Get the indices of required fields in a header. |
| iBiBsFun | Spline basis function integration. |
| initialize_weights | Initialize weights |
| intBinBspl | Binomial and B-spline integration. |
| locfdr2FDR | Convert locfdr to FDR. |
| logical_to_winning_chip | Convert a logical value to a character. |
| npbin | NPBin |
| npbin_color_palette | A color palette |
| npbin_preprocess_counts | Preprocess allele count data |
| npbin_preprocess_file | Preprocess allele count data, handling a header if necessary. |
| overdispersion | Calculate beta overdispersion from shape parameters |
| plot_estimated_null | Plot an estimated null distribution |
| rank2nhit | Convert ranking to the number of discoveries |
| symmetric_beta_shape_from_variance | Calculate a symmetric shape parameter from the variance |
