plot_refflat: Plot refflat

In anthony-aylward/refflat: Download and plot refFlat data

Description

Plot refflat data in an interval

Usage

plot_refflat(chrom, start, end, rf = refflat_data, flatten = TRUE,
  arrowhead_length = 0.125, angle = 15, lwd = 2, buffer = 0)

Arguments

chrom	integer. The chromosome of the plotting interval. (e.g. "chr16")
start	integer. The start of the plotting interval.
end	integer. The end of the plotting interval.
rf	data frame. The refflat dataset.
flatten	logical. Flatten genes with multiple transcripts.
arrowhead_length	numeric. Length of the edges of the arrow head (in inches).
angle	numeric. Angle from the shaft of the arrow to the edge of the arrow head.
lwd	numeric. Weight of lines.
buffer	integer. Size of buffer (in bp) to impose around genes, in order to prevent merged edges.

anthony-aylward/refflat documentation built on Nov. 9, 2019, 1:45 p.m.