refflat_data: RefFlat gene annotations from RefSeq
In anthony-aylward/refflat: Download and plot refFlat data
Description
Usage
Format
Source
Description
RefFlat gene annotations from RefSeq
Usage
1
Format
A data frame with 72153 rows and 11 variables:
- geneName
name of gene as it appears in genome browser
- name
refFlat name of gene
- chrom
reference sequence chromosome or scaffold
- strand
+ or - for strand
- txStart
transcription start position
- txEnd
transcription end position
- cdsStart
coding region start
- cdsEnd
coding region end
- exonCount
Number of exons
- exonStarts
exon start positions
- exonEnds
exon end positions
Source
http://hgdownload.soe.ucsc.edu/goldenPath/hg19/database/refFlat.txt.gz
anthony-aylward/refflat documentation built on Nov. 9, 2019, 1:45 p.m.
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Description Usage Format Source
Description
RefFlat gene annotations from RefSeq
Usage
1 |
Format
A data frame with 72153 rows and 11 variables:
- geneName
name of gene as it appears in genome browser
- name
refFlat name of gene
- chrom
reference sequence chromosome or scaffold
- strand
+ or - for strand
- txStart
transcription start position
- txEnd
transcription end position
- cdsStart
coding region start
- cdsEnd
coding region end
- exonCount
Number of exons
- exonStarts
exon start positions
- exonEnds
exon end positions
Source
http://hgdownload.soe.ucsc.edu/goldenPath/hg19/database/refFlat.txt.gz
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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