make_Q_splines_multi: Multivariate Spline Gibbs Model Pseudolikelihood Design...

Description Usage Arguments Details Value

View source: R/make-Q-spline.R

Description

Construct the model matrix of multi-level multi-variate saturation model for penalised logistic regression pseudo-likelihood.

Usage

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make_Q_splines_multi(x, knots1, knots2, spline_order = 3, sat1 = 1,
  sat2 = 1, sat1l = NULL, sat2l = NULL, auto_sat = TRUE,
  covariates, penalise_covariates = TRUE, rho_factor = 4,
  rho_N = NULL, dum_max = 10000, dum_min = 100, dummies = NULL,
  save_locations = TRUE, ..., verb = FALSE, cov_noise_sd = 0,
  fatal_col0 = FALSE, border_r = 0)

Arguments

x

Point pattern data, preferrably a ppp-object. Say of p-types.

knots1

Intra-type knots, p vectors in a list. Include 0 and max R in each vector.

knots2

Inter-type knots, p*(p-1)/2 vectors in a list. Include 0 and max R in each vector.

spline_order

3 is cubic, 1 is tents. Default 3.

sat1

Intra-type saturations, vectors (for Saturation model)

sat2

Inter-type saturations, vectors (for Saturation model)

sat1l

More particular sat1, matrices (for Saturation model)

sat2l

More particular sat2, matrices (for Saturation model)

auto_sat

Determine saturations automatically?

covariates

list of im-objects to use as covariates

penalise_covariates

If FALSE, covariates are estimated without penalisation.

rho_factor

Dummy pattern intensity w.r.t. data

rho_N

Use this many dummies (vector pf length p)

dum_max

Upper limit for dummy count, per type (after rho_factor and rho_N)

dum_min

Lower limit for dummy count, per type (after rho_factor and rho_N)

dummies

Optional: (x,y,m) matrix of dummy locations to use.

save_locations

Store the locations in the output object? Used for CV

...

Omitted.

verb

Verbosity

cov_noise_sd

If > 0, add normal noise to covariates.

fatal_col0

Should we error on zero interaction columns (singularities).

border_r

Border correction range.

Details

[todo]

Value

A list suitable for inputting to the fitGlbin_CV function


antiphon/PenGE documentation built on July 31, 2019, 10:01 p.m.