Description Usage Arguments Value
View source: R/peaks.annotations.R
Counting of peaks in genome
1 | peaks.annotaions(peaks, ref, is.Ratio = T)
|
peaks |
is a GenomeRanges object with matadata colum that is named 'TF' (TF - Transcroption factor) and contain name for each peaks |
ref |
is TxDb object |
is.Ratio |
if False returns a number of peaks in diff regions, if False returns proportions of peaks in diif regions |
data.frame
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