peaks.clustering: peaks.clustering
In anton-tsukanov/ClanChiPeaks: Cluster analisys of ChIP-seq peaks
Description
Usage
Arguments
Value
View source: R/peaks.clustering.R
Description
Find clusters based on distance between peaks
Usage
1
peaks.clustering(peaks, cut.off = 20, min.size = 1)
Arguments
peaks
is a GenomeRanges object with matadata colum that is named 'TF' (TF - Transcroption factor) and contain name for each peaks
cut.off
is the maximal distance between two centres of peaks that belongs to the same cluster
min.size
is a minimal size of cluster
Value
GRangesList object where each element contains cluster of peaks
anton-tsukanov/ClanChiPeaks documentation built on Oct. 29, 2019, 2:12 a.m.
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Description Usage Arguments Value
View source: R/peaks.clustering.R
Description
Find clusters based on distance between peaks
Usage
1 | peaks.clustering(peaks, cut.off = 20, min.size = 1)
|
Arguments
peaks |
is a GenomeRanges object with matadata colum that is named 'TF' (TF - Transcroption factor) and contain name for each peaks |
cut.off |
is the maximal distance between two centres of peaks that belongs to the same cluster |
min.size |
is a minimal size of cluster |
Value
GRangesList object where each element contains cluster of peaks
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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