summary_table: Get Summary Information for a MITAB Table

In antonio-mora/iRefR: iRefIndex Manager

Description

Get statistical information about some of the columns of a given iRefIndex/MITAB table.

Usage

     summary_table(MITAB_table)
     

Arguments

MITAB_table

MITAB/iRefIndex R table to summarize.

Value

output

R list containing: Number of non-canonical interactions, number of canonical interactions, number of non-canonical proteins, number of canonical proteins, number of publications, number of experimental methods, distribution of source databases, distribution of interaction types, distribution of number of participants.

Author(s)

Antonio Mora <[e-mail]>

Examples

     ## get tables
     irefindex_13_ecoli = get_irefindex("562", "13.0", tempdir())

     ## execute function
     general_ecoli_statistics = summary_table(irefindex_13_ecoli)
     intact_statistics = summary_table(select_database("intact", irefindex_13_ecoli,
 "this_database"))
     complexes_statistics = summary_table(select_interaction_type("complex",
 irefindex_13_ecoli))
     low_thruput_statistics = summary_table(select_confidence("lpr", c(1,2),
 irefindex_13_ecoli))
     

antonio-mora/iRefR documentation built on May 10, 2019, 12:26 p.m.